secsse: Several Examined and Concealed States-Dependent Speciation and Extinction

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. 2019 Systematic Biology 68: 317-328 <doi:10.1093/sysbio/syy057>.

Version: 2.0.7
Depends: R (≥ 3.5.0)
Imports: utils, DDD (≥ 4.0), ape, foreach, doParallel, apTreeshape, phylobase, geiger, deSolve
Suggests: diversitree, phytools, testthat, testit, knitr, rmarkdown
Enhances: doMC
Published: 2021-02-12
Author: Leonel Herrera Alsina [aut], Paul van Els [aut], Rampal S. Etienne ORCID iD [cre, aut]
Maintainer: Rampal S. Etienne <r.s.etienne at>
License: GPL-3
NeedsCompilation: yes
CRAN checks: secsse results


Reference manual: secsse.pdf
Vignettes: "Using SecSSE ML search"
Package source: secsse_2.0.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: secsse_2.0.7.tgz, r-oldrel: secsse_2.0.7.tgz
Old sources: secsse archive


Please use the canonical form to link to this page.