plinkFile: 'PLINK' (and 'GCTA') File Helpers

Reads/write binary genotype file compatible with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.

Version: 0.2.1
Depends: R (≥ 3.5.0)
Published: 2023-11-24
Author: Xiaoran Tong [aut, cre]
Maintainer: Xiaoran Tong <xiaoran.tong.cn at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: plinkFile results

Documentation:

Reference manual: plinkFile.pdf

Downloads:

Package source: plinkFile_0.2.1.tar.gz
Windows binaries: r-devel: plinkFile_0.2.1.zip, r-release: plinkFile_0.2.1.zip, r-oldrel: plinkFile_0.2.1.zip
macOS binaries: r-release (arm64): plinkFile_0.2.1.tgz, r-oldrel (arm64): plinkFile_0.2.1.tgz, r-release (x86_64): plinkFile_0.2.1.tgz
Old sources: plinkFile archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=plinkFile to link to this page.