paropt: Parameter Optimizing of ODE-Systems

Enable optimization of parameters of ordinary differential equations. Therefore, using 'SUNDIALS' to solve the ODE-System (see Hindmarsh, Alan C., Peter N. Brown, Keith E. Grant, Steven L. Lee, Radu Serban, Dan E. Shumaker, and Carol S. Woodward. (2005) <doi:10.1145/1089014.1089020>). Furthermore, for optimization the particle swarm algorithm is used (see: Akman, Devin, Olcay Akman, and Elsa Schaefer. (2018) <doi:10.1155/2018/9160793> and Sengupta, Saptarshi, Sanchita Basak, and Richard Peters. (2018) <doi:10.3390/make1010010>). The ODE-System has to be passed as 'Rcpp'-function. The information for the parameter boundaries and states are conveyed using data.frames.

Version: 0.2.1
Imports: Rcpp (≥ 1.0.4)
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown
Published: 2021-06-14
Author: Krämer Konrad [aut, cre], Krämer Johannes [aut], Heyer Arnd [ths], University of Stuttgart [uvp], Institute of Biomaterials and Biomolecular Systems at the University of Stuttgart [his] | file AUTHORS
paropt author details
Maintainer: Krämer Konrad <Konrad_kraemer at yahoo.de>
BugReports: https://github.com/Konrad1991/paropt
License: GPL-3 | file LICENSE
Copyright: file COPYRIGHTS
paropt copyright details
NeedsCompilation: yes
CRAN checks: paropt results

Documentation:

Reference manual: paropt.pdf
Vignettes: paropt

Downloads:

Package source: paropt_0.2.1.tar.gz
Windows binaries: r-devel: paropt_0.2.1.zip, r-devel-UCRT: paropt_0.2.1.zip, r-release: paropt_0.2.1.zip, r-oldrel: paropt_0.2.1.zip
macOS binaries: r-release (arm64): paropt_0.2.1.tgz, r-release (x86_64): paropt_0.2.1.tgz, r-oldrel: paropt_0.2.1.tgz
Old sources: paropt archive

Linking:

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