Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | assertthat, ccaPP, dplyr, epiR, magrittr, purrr, rlang |
| Suggests: | covr, knitr, rmarkdown, testthat |
| Published: | 2021-02-06 |
| Author: | Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut] |
| Maintainer: | Derek Chiu <dchiu at bccrc.ca> |
| BugReports: | https://github.com/TalhoukLab/nanostringr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/TalhoukLab/nanostringr/, https://talhouklab.github.io/nanostringr/ |
| NeedsCompilation: | no |
| Citation: | nanostringr citation info |
| Materials: | NEWS |
| CRAN checks: | nanostringr results |
| Reference manual: | nanostringr.pdf |
| Vignettes: |
nanostringr Vignettes |
| Package source: | nanostringr_0.2.0.tar.gz |
| Windows binaries: | r-devel: nanostringr_0.2.0.zip, r-release: nanostringr_0.2.0.zip, r-oldrel: nanostringr_0.2.0.zip |
| macOS binaries: | r-release: nanostringr_0.2.0.tgz, r-oldrel: nanostringr_0.2.0.tgz |
| Old sources: | nanostringr archive |
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