modelSSE: Modelling Infectious Disease Superspreading from Contact Tracing Data

Comprehensive analytical tools are provided to characterize infectious disease superspreading from contact tracing surveillance data. The underlying theoretical frameworks of this toolkit include branching process with transmission heterogeneity (Lloyd-Smith et al. (2005) <doi:10.1038/nature04153>), case cluster size distribution (Nishiura et al. (2012) <doi:10.1016/j.jtbi.2011.10.039>, Blumberg et al. (2014) <doi:10.1371/journal.ppat.1004452>, and Kucharski and Althaus (2015) <doi:10.2807/1560-7917.ES2015.20.25.21167>), and decomposition of reproduction number (Zhao et al. (2022) <doi:10.1371/journal.pcbi.1010281>).

Version: 0.1-3
Depends: R (≥ 3.0.0)
Imports: Delaporte
Published: 2023-09-07
Author: Shi Zhao ORCID iD [aut, cre]
Maintainer: Shi Zhao <zhaoshi.cmsa at>
License: GPL-3
NeedsCompilation: no
In views: Epidemiology
CRAN checks: modelSSE results


Reference manual: modelSSE.pdf


Package source: modelSSE_0.1-3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): modelSSE_0.1-3.tgz, r-oldrel (arm64): modelSSE_0.1-3.tgz, r-release (x86_64): modelSSE_0.1-3.tgz
Old sources: modelSSE archive


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