kibior: A Simple Data Management and Sharing Tool

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <>.

Version: 0.1.1
Depends: R (≥ 4.0)
Imports: R6 (≥ 2.5.0), data.table (≥ 1.13.2), stringr (≥ 1.4.0), purrr (≥ 0.3.4), jsonlite (≥ 1.7.1), rio (≥ 0.5.16), tibble (≥ 3.0.4), dplyr (≥ 1.0.2), magrittr (≥ 1.5), tidyr (≥ 1.1.2), elastic (≥ 1.1.0), Biostrings, Rsamtools, rtracklayer
Suggests: ggplot2 (≥ 3.3.2), readr (≥ 1.4.0), xml2 (≥ 1.3.2), yaml (≥ 2.2.1), testthat (≥ 3.0.0), rmarkdown (≥ 2.5), knitr (≥ 1.30)
Published: 2021-01-28
DOI: 10.32614/CRAN.package.kibior
Author: Régis Ongaro-Carcy ORCID iD [aut, cre, ctb], Arnaud Droit [fnd]
Maintainer: Régis Ongaro-Carcy <regis.ongaro-carcy2 at>
License: GPL-2
NeedsCompilation: no
Citation: kibior citation info
Materials: README
CRAN checks: kibior results


Reference manual: kibior.pdf
Vignettes: kibior_biological_examples


Package source: kibior_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): kibior_0.1.1.tgz, r-oldrel (arm64): kibior_0.1.1.tgz, r-release (x86_64): kibior_0.1.1.tgz, r-oldrel (x86_64): kibior_0.1.1.tgz
Old sources: kibior archive


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