Version 0.14 ------------------------------------------------------------------------- FEATURES * new release on CRAN. * performs Bayesian non-parametric modeling on a (rectangular) set of functional data observations. * The collection of functions may be modeled under Gaussian process (GP) or intrinsic Gaussian Markov * random field (iGMRF) prior formulations. * The covariance and precision parameters of the GP and iGMRF formulations, respectively, are placed under * a Dirichlet process (DP) prior to allow the data to discover dependence among the estimated functions * where co-clusters functions are drawn from distributions sharing the same covariance and precision parameters. * the GP prior formulation is invoked with gpdpgrow() * any number of additive covariance terms may be specified with gpdpgrow(). * for example, if there are 4 terms, then the input variable, gp_cov = c("rq","se","sn","sn") * if the covariance functions for the 4 terms are structured as (rational quadratic, squared exponential, * seasonal, seasonal), respectively. The input variable, sn_order = c(3,12), sets the order for each seasonality * term; in this case, 3 months and 12 months (assuming the data time scale is denoted by month). * the iGMRF prior is invoked with gmrfdpgrow(), also allowing any number of additive precision terms * the input variable, q_type = c("tr","sn","sn"), denotes "tr' = trend, and "sn" = seasonality terms. * input, q_order = c(2,3,12) denotes the order for the associated term; for example, the second term * is specified as seasonal of order = 3 (e.g. months). CHANGES 08/10/2014 ----------- * version 0.1 launched on CRAN. 12/09/2014 ---------- * replaced srand() with arma_rng::set_seed_random() to initialize random seed for RcppArmadillo. * removed use of arma::sp_mat (sparse matrix) formulation for normalized CAR adjacency matrix from gmrfdpgrow() due to memory initialization issue in RcppArmadillo. 02/20/2015 ---------- * removed use of arma_rng::set_seed_random() to avoid warning about setting R seed from C++. 10/16/2015 ---------- * Minor changes in anticipation of ggplot2 1.1.0 07/27/2016 ---------- * return pop_plot and samp_plot ggplot2 objects in gen_informative_sample() that plot generated synthetic functions in the population and sample, respectively. * employ uniform(0,1) starting values in the MCMC sampler when co-sampling the GP functions, bb, in gpdpgrow() to prevent numerical instability producing NaNs in auxclusterstep() for sampling cluster assignments under Debian Linux. 04/05/2017 ---------- * added new option to gmrfdpgrow() to allow input of N x R predictor matrix, ksi, that is used to update the prior probability of cluster assignments, s. This dependent product partition model is enabled by placing a distribution on the ksi, though, we don't believe they're random to esablish a coherence function multiplicative input to the prior distribution on cluster assignment. * Note that we had to switch the sampling algorithm for cluster assignment from a conjugate multinomial to the non=conjugate Neal's algorithm 8 since the inclusion of ksi produces a non-conjugate mixture. * added new option to gmrfdpgrow() to support count data response if user inputs non-NULL N x T offset matrix, E.