Update citation to reflect acceptance at JOSS

Update documentation (package help page, links and cross-references)

Critical changes to vignettes to reduce build time (required for regular CRAN checks)

Major stable release: note changes to results are possible! (legacy code should run without breaking)

Expanded documentation and examples (consolidate into fewer vignettes for clarity)

Resolves errors handling inhibiting edges

Efficiently compute a state matrix from a vector of edge properties from paths

Enables passing “sd” (standard deviation) to alter covariance of Sigma matrix

Adds methods for computing using Laplacian matrices

Adds function to compute simulations directly from an adjacency matrix

Migrates computing states to sigma (these matrices include inhibitions)

Initial CRAN release

Unit testing for all functions

Checking for compatible inputs

Passing layout parameters to plotting function

Full vignette of biological pathway

Merge plot_directed from function from plot.igraph to avoid github dependencies

Added example data for reactome pathways

- Initial version of the package for generating simulated data