ctpm: Continuous-Time Phylogenetic Modeling

Functions for identifying, fitting, and applying continuous-time stochastic models to phylogenetic data. The package is based on methods introduced in Noonan et al. (2021) <doi:10.1101/2021.05.21.445056>.

Version: 1.0.1
Depends: R (≥ 3.5.0), ape, ctmm
Imports: slouch, ClusterR, methods, stats, utils
Suggests: phytools, viridis, knitr, rmarkdown, nlme, progress, graphics, grDevices
Published: 2021-11-08
Author: Michael J. Noonan [aut, cre], Christen H. Fleming [aut]
Maintainer: Michael J. Noonan <michael.noonan at ubc.ca>
License: GPL-3
URL: https://github.com/NoonanM/ctpm,
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ctpm results

Documentation:

Reference manual: ctpm.pdf
Vignettes: Variogram

Downloads:

Package source: ctpm_1.0.1.tar.gz
Windows binaries: r-devel: ctpm_1.0.1.zip, r-release: ctpm_1.0.1.zip, r-oldrel: ctpm_1.0.1.zip
macOS binaries: r-release (arm64): ctpm_1.0.1.tgz, r-release (x86_64): ctpm_1.0.1.tgz, r-oldrel: ctpm_1.0.1.tgz

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