## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----setup--------------------------------------------------------------------
library(MUGS)

## ----generate_data------------------------------------------------------------
# Generate data
seed =1
p = 5
n1 = 100
n2 = 100
n.common = 50
n.group = 30
sigma.eps.1 = 1
sigma.eps.2 = 3
ratio.delta = 0.05
network.k = 5
rho.beta = 0.5
rho.U0 = 0.4
rho.delta = 0.7
sigma.rare = 10
n.rare = 20
group.size = 5

DataGen.out <- DataGen_rare_group(seed, p, n1, n2, n.common, n.group, sigma.eps.1, sigma.eps.2, ratio.delta, network.k, rho.beta, rho.U0, rho.delta, sigma.rare, n.rare, group.size)

## ----examine_output-----------------------------------------------------------
# View structure of the output
str(DataGen.out)

# Print the first few rows and columns of the S.1 matrix
cat("\nFirst 5 rows and columns of S.1:\n")
print(DataGen.out$S.1[1:5, 1:5])

# Print the first few rows and columns of the S.2 matrix
cat("\nFirst 5 rows and columns of S.2:\n")
print(DataGen.out$S.2[1:5, 1:5])