GARCOM: Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.

Version: 1.2.2
Depends: R (≥ 3.5.0)
Imports: data.table (≥ 1.12.8), stats, vcfR (≥ 1.12.0)
Suggests: testthat
Published: 2022-12-23
DOI: 10.32614/CRAN.package.GARCOM
Author: Sanjeev Sariya [aut, cre, cph], Giuseppe Tosto [aut, cph]
Maintainer: Sanjeev Sariya <sanjeevsariya at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: GARCOM citation info
Materials: README NEWS
CRAN checks: GARCOM results


Reference manual: GARCOM.pdf


Package source: GARCOM_1.2.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): GARCOM_1.2.2.tgz, r-oldrel (arm64): GARCOM_1.2.2.tgz, r-release (x86_64): GARCOM_1.2.2.tgz, r-oldrel (x86_64): GARCOM_1.2.2.tgz
Old sources: GARCOM archive


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