FSAtools: Fragment Analysis and Capillary Sequencing Tool Kit

A flexible and interfaced framework for importing, processing and ploting Applied Biosystems data files. Application to Reverse-Transcriptase Multiplex Ligation-dependent Probe Amplification (RT-MLPA) gene-expression profiling and classification is illustrated in Mareschal, Ruminy et al (2015) <doi:10.1016/j.jmoldx.2015.01.007>. Gene-fusion detection and Sanger sequencing are illustrated in Mareschal, Palau et al (2021) <doi:10.1182/bloodadvances.2020002517>. Examples are provided for genotyping applications as well.

Version: 2.0.5
Depends: graphics, grDevices, stats, utils, R (≥ 2.10)
Imports: methods
Suggests: Biostrings, parallel, tcltk, tools
Published: 2023-08-18
Author: Sylvain Mareschal [aut, cre], Philippe Ruminy [dtc, ctb], Jean R. Lobry [ctb], Fabrice Jardin [ths]
Maintainer: Sylvain Mareschal <mareschal at ovsa.fr>
BugReports: https://github.com/maressyl/R.FSAtools/issues
License: GPL (≥ 3)
URL: https://bioinformatics.ovsa.fr/FSAtools
NeedsCompilation: no
Materials: README NEWS
CRAN checks: FSAtools results

Documentation:

Reference manual: FSAtools.pdf

Downloads:

Package source: FSAtools_2.0.5.tar.gz
Windows binaries: r-devel: FSAtools_2.0.5.zip, r-release: FSAtools_2.0.5.zip, r-oldrel: FSAtools_2.0.5.zip
macOS binaries: r-release (arm64): FSAtools_2.0.5.tgz, r-oldrel (arm64): FSAtools_2.0.5.tgz, r-release (x86_64): FSAtools_2.0.5.tgz

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