DBTC: Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis

First using 'dada2' R tools to analyse metabarcode data, the 'DBTC' package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Version: 0.1.0
Imports: dada2, ggplot2, parallel, pbapply, plyr, ShortRead, stats, taxonomizr, utils
Published: 2024-04-27
DOI: 10.32614/CRAN.package.DBTC
Author: Robert G Young ORCID iD [aut, cre, cph]
Maintainer: Robert G Young <rgyoung6 at gmail.com>
License: GPL-2 | GPL-3
URL: <https://github.com/rgyoung6/DBTC>
NeedsCompilation: no
Language: en-GB
Materials: README
CRAN checks: DBTC results


Reference manual: DBTC.pdf


Package source: DBTC_0.1.0.tar.gz
Windows binaries: r-devel: DBTC_0.1.0.zip, r-release: DBTC_0.1.0.zip, r-oldrel: DBTC_0.1.0.zip
macOS binaries: r-release (arm64): DBTC_0.1.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): DBTC_0.1.0.tgz, r-oldrel (x86_64): not available

Reverse dependencies:

Reverse imports: DBTCShiny


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