CDMConnector: Connect to an OMOP Common Data Model

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

Version: 1.6.1
Depends: R (≥ 4.0)
Imports: dplyr, dbplyr (≥ 2.5.0), DBI (≥ 0.3.0), checkmate, cli, purrr, rlang, tidyselect, readr, glue, waldo, methods, withr, lifecycle, jsonlite, stringr, stringi, fs, generics, tidyr, omopgenerics (≥ 0.1.2)
Suggests: SqlRender, CirceR, rJava, covr, knitr, rmarkdown, duckdb, RSQLite, RPostgres, DatabaseConnector, odbc, ggplot2, bigrquery, lubridate, clock, tibble, testthat (≥ 3.0.0), pool, snakecase, palmerpenguins, tictoc
Enhances: arrow
Published: 2024-11-29
DOI: 10.32614/CRAN.package.CDMConnector
Author: Adam Black ORCID iD [aut, cre], Artem Gorbachev [aut], Edward Burn [aut], Marti Catala Sabate [aut]
Maintainer: Adam Black <black at ohdsi.org>
BugReports: https://github.com/darwin-eu/CDMConnector/issues
License: Apache License (≥ 2)
URL: https://darwin-eu.github.io/CDMConnector/, https://github.com/darwin-eu/CDMConnector
NeedsCompilation: no
Materials: README NEWS
CRAN checks: CDMConnector results

Documentation:

Reference manual: CDMConnector.pdf
Vignettes: Getting Started (source, R code)
Working with cohorts (source, R code)
CDMConnector and dbplyr (source, R code)
DBI connection examples (source, R code)
CDM reference backends (source, R code)
Using CDM attributes (source, R code)

Downloads:

Package source: CDMConnector_1.6.1.tar.gz
Windows binaries: r-devel: CDMConnector_1.6.1.zip, r-release: CDMConnector_1.6.1.zip, r-oldrel: CDMConnector_1.6.1.zip
macOS binaries: r-release (arm64): CDMConnector_1.6.1.tgz, r-oldrel (arm64): CDMConnector_1.6.1.tgz, r-release (x86_64): CDMConnector_1.6.1.tgz, r-oldrel (x86_64): CDMConnector_1.6.1.tgz
Old sources: CDMConnector archive

Reverse dependencies:

Reverse imports: CohortCharacteristics, CohortConstructor, CohortSurvival, CohortSymmetry, DrugExposureDiagnostics, DrugUtilisation, IncidencePrevalence, OmopSketch, PatientProfiles, TestGenerator
Reverse suggests: CodelistGenerator, OmopViewer, PhenotypeR, TreatmentPatterns

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CDMConnector to link to this page.