CRAN Package Check Results for Package themetagenomics

Last updated on 2021-06-21 11:52:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 38.47 373.67 412.14 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 27.96 273.78 301.74 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 581.84 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.2 491.48 OK
r-devel-windows-x86_64 1.0.2 57.00 461.00 518.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.0.2 ERROR
r-patched-linux-x86_64 1.0.2 39.27 350.90 390.17 OK
r-patched-solaris-x86 1.0.2 708.80 OK
r-release-linux-x86_64 1.0.2 33.03 353.66 386.69 OK
r-release-macos-arm64 1.0.2 WARN
r-release-macos-x86_64 1.0.2 OK
r-release-windows-ix86+x86_64 1.0.2 95.00 563.00 658.00 NOTE
r-oldrel-macos-x86_64 1.0.2 OK

Check Details

Version: 1.0.2
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘glmnet’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Packages required but not available: 'plotly', 'rstan'
    
    Package suggested but not available for checking: 'covr'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘functional_prediction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 37-39 (functional_prediction.Rmd)
    Error: processing vignette 'functional_prediction.Rmd' failed with diagnostics:
    download from 'https://gitlab.com/sw1/themetagenomics_data/raw/master/ko_13_5_precalculated.tab.gz' failed
    --- failed re-building ‘functional_prediction.Rmd’
    
    --- re-building ‘thematic_structure.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘thematic_structure.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘functional_prediction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64

Version: 1.0.2
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     doc 1.0Mb
     libs 2.2Mb
     references 1.1Mb
Flavor: r-release-windows-ix86+x86_64