CRAN Package Check Results for Package numbat

Last updated on 2024-02-21 00:54:35 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.2-1 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.2-1 83.29 143.26 226.55 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.2-1 422.79 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.2-1 406.18 NOTE
r-devel-windows-x86_64 1.3.2-1 85.00 184.00 269.00 NOTE
r-patched-linux-x86_64 1.3.2-1 101.90 185.32 287.22 NOTE
r-release-linux-x86_64 1.3.2-1 86.02 182.48 268.50 NOTE
r-release-macos-arm64 1.3.2-1 91.00 NOTE
r-release-macos-x86_64 1.3.2-1 185.00 NOTE
r-release-windows-x86_64 1.3.2-1 110.00 222.00 332.00 NOTE
r-oldrel-macos-arm64 1.3.2-1 94.00 NOTE
r-oldrel-windows-x86_64 1.3.2-1 111.00 210.00 321.00 NOTE

Check Details

Version: 1.3.2-1
Check: Rd files
Result: NOTE checkRd: (-1) get_exp_likelihoods.Rd:17: Lost braces; missing escapes or markup? 17 | \item{exp_counts}{dataframe Single-cell expression counts {CHROM, seg, cnv_state, gene, Y_obs, lambda_ref}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.2-1
Check: Rd \usage sections
Result: NOTE Documented arguments not in \usage in Rd file 'exp_hclust.Rd': ‘df_allele’ Documented arguments not in \usage in Rd file 'log_mem.Rd': ‘msg’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 1.3.2-1
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.3.2-1
Check: package dependencies
Result: NOTE Imports includes 30 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.2-1
Check: installed package size
Result: NOTE installed size is 5.0Mb sub-directories of 1Mb or more: data 4.1Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.3.2-1
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘R.utils’ ‘optparse’ ‘vcfR’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc