CRAN Package Check Results for Package PAutilities

Last updated on 2021-06-14 11:52:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 31.37 78.52 109.89 ERROR
r-devel-linux-x86_64-debian-gcc 1.0.1 20.49 58.56 79.05 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.1 144.89 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.1 126.96 ERROR
r-devel-windows-x86_64 1.0.1 39.00 118.00 157.00 ERROR
r-devel-windows-x86_64-gcc10-UCRT 1.0.1 ERROR
r-patched-linux-x86_64 1.0.1 23.83 74.44 98.27 OK
r-patched-solaris-x86 1.0.1 154.00 OK
r-release-linux-x86_64 1.0.1 21.71 74.44 96.15 OK
r-release-macos-arm64 1.0.1 ERROR
r-release-macos-x86_64 1.0.1 OK
r-release-windows-ix86+x86_64 1.0.1 67.00 152.00 219.00 OK
r-oldrel-macos-x86_64 1.0.1 OK
r-oldrel-windows-ix86+x86_64 1.0.1 69.00 151.00 220.00 OK

Check Details

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R' [3s/3s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(PAutilities)
     package 'PAutilities' was built under R version 3.5.0
     >
     > test_check("PAutilities")
     == Failed tests ================================================================
     -- Failure (test_metabolic.R:51:3): BMR equations behave as expected -----------
     list(test1, test2, test3, test4, test5, test6, test7, test8) has changed from known value recorded in 'BMR_calculations.rds'.
     Component 1: Attributes: < Component "row.names": Modes: numeric, character >
     Component 1: Attributes: < Component "row.names": target is numeric, current is character >
     Component 2: Attributes: < Component "row.names": Modes: numeric, character >
     Component 2: Attributes: < Component "row.names": target is numeric, current is character >
     Component 3: Attributes: < Component "row.names": Modes: numeric, character >
     Component 3: Attributes: < Component "row.names": target is numeric, current is character >
     Component 4: Attributes: < Component "row.names": Modes: numeric, character >
     Component 4: Attributes: < Component "row.names": target is numeric, current is character >
     Component 5: Attributes: < Component "row.names": Modes: numeric, character >
     ...
     Backtrace:
     x
     1. \-testthat::expect_equal_to_reference(...) test_metabolic.R:51:2
     2. \-testthat::expect_known_value(..., update = update)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2s/3s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(PAutilities)
     package 'PAutilities' was built under R version 3.5.0
     >
     > test_check("PAutilities")
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Failure (test_metabolic.R:51:3): BMR equations behave as expected ───────────
     list(test1, test2, test3, test4, test5, test6, test7, test8) has changed from known value recorded in 'BMR_calculations.rds'.
     Component 1: Attributes: < Component "row.names": Modes: numeric, character >
     Component 1: Attributes: < Component "row.names": target is numeric, current is character >
     Component 2: Attributes: < Component "row.names": Modes: numeric, character >
     Component 2: Attributes: < Component "row.names": target is numeric, current is character >
     Component 3: Attributes: < Component "row.names": Modes: numeric, character >
     Component 3: Attributes: < Component "row.names": target is numeric, current is character >
     Component 4: Attributes: < Component "row.names": Modes: numeric, character >
     Component 4: Attributes: < Component "row.names": target is numeric, current is character >
     Component 5: Attributes: < Component "row.names": Modes: numeric, character >
     ...
     Backtrace:
     █
     1. └─testthat::expect_equal_to_reference(...) test_metabolic.R:51:2
     2. └─testthat::expect_known_value(..., update = update)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(PAutilities)
     package 'PAutilities' was built under R version 3.5.0
     >
     > test_check("PAutilities")
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Failure (test_metabolic.R:51:3): BMR equations behave as expected ───────────
     list(test1, test2, test3, test4, test5, test6, test7, test8) has changed from known value recorded in 'BMR_calculations.rds'.
     Component 1: Attributes: < Component "row.names": Modes: numeric, character >
     Component 1: Attributes: < Component "row.names": target is numeric, current is character >
     Component 2: Attributes: < Component "row.names": Modes: numeric, character >
     Component 2: Attributes: < Component "row.names": target is numeric, current is character >
     Component 3: Attributes: < Component "row.names": Modes: numeric, character >
     Component 3: Attributes: < Component "row.names": target is numeric, current is character >
     Component 4: Attributes: < Component "row.names": Modes: numeric, character >
     Component 4: Attributes: < Component "row.names": target is numeric, current is character >
     Component 5: Attributes: < Component "row.names": Modes: numeric, character >
     ...
     Backtrace:
     █
     1. └─testthat::expect_equal_to_reference(...) test_metabolic.R:51:2
     2. └─testthat::expect_known_value(..., update = update)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
     Error: Test failures
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R' [4s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(PAutilities)
     package 'PAutilities' was built under R version 3.5.0
     >
     > test_check("PAutilities")
     == Failed tests ================================================================
     -- Failure (test_metabolic.R:51:3): BMR equations behave as expected -----------
     list(test1, test2, test3, test4, test5, test6, test7, test8) has changed from known value recorded in 'BMR_calculations.rds'.
     Component 1: Attributes: < Component "row.names": Modes: numeric, character >
     Component 1: Attributes: < Component "row.names": target is numeric, current is character >
     Component 2: Attributes: < Component "row.names": Modes: numeric, character >
     Component 2: Attributes: < Component "row.names": target is numeric, current is character >
     Component 3: Attributes: < Component "row.names": Modes: numeric, character >
     Component 3: Attributes: < Component "row.names": target is numeric, current is character >
     Component 4: Attributes: < Component "row.names": Modes: numeric, character >
     Component 4: Attributes: < Component "row.names": target is numeric, current is character >
     Component 5: Attributes: < Component "row.names": Modes: numeric, character >
     ...
     Backtrace:
     x
     1. \-testthat::expect_equal_to_reference(...) test_metabolic.R:51:2
     2. \-testthat::expect_known_value(..., update = update)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     Component 2: Attributes: < Component "row.names": target is numeric, current is character >
     Component 3: Attributes: < Component "row.names": Modes: numeric, character >
     Component 3: Attributes: < Component "row.names": target is numeric, current is character >
     Component 4: Attributes: < Component "row.names": Modes: numeric, character >
     Component 4: Attributes: < Component "row.names": target is numeric, current is character >
     Component 5: Attributes: < Component "row.names": Modes: numeric, character >
     ...
     Backtrace:
     x
     1. \-testthat::expect_equal_to_reference(...) test_metabolic.R:51:2
     2. \-testthat::expect_known_value(..., update = update)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.1
Check: examples
Result: ERROR
    Running examples in ‘PAutilities-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: get_transition_info
    > ### Title: Invoke the Transition Pairing Method
    > ### Aliases: get_transition_info validate_transition_info_input
    > ### impute_trans recode_trans_names
    > ### Keywords: internal
    >
    > ### ** Examples
    >
    > set.seed(100)
    > predictions <- (sample(1:100)%%2)
    > references <- (sample(1:100)%%2)
    > window_size <- 7
    > get_transition_info(predictions, references, window_size)
Flavor: r-release-macos-arm64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘tpm.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Flavor: r-release-macos-arm64