CRAN Package Check Results for Package EHR

Last updated on 2024-11-02 20:49:28 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-11 11.47 236.52 247.99 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-11 7.70 180.67 188.37 NOTE
r-devel-linux-x86_64-fedora-clang 0.4-11 381.95 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-11 382.41 NOTE
r-devel-windows-x86_64 0.4-11 12.00 326.00 338.00 NOTE
r-patched-linux-x86_64 0.4-11 11.62 225.60 237.22 NOTE
r-release-linux-x86_64 0.4-11 10.32 214.55 224.87 ERROR
r-release-macos-arm64 0.4-11 128.00 NOTE
r-release-macos-x86_64 0.4-11 204.00 NOTE
r-release-windows-x86_64 0.4-11 12.00 324.00 336.00 NOTE
r-oldrel-macos-arm64 0.4-11 152.00 OK
r-oldrel-macos-x86_64 0.4-11 245.00 OK
r-oldrel-windows-x86_64 0.4-11 14.00 362.00 376.00 OK

Check Details

Version: 0.4-11
Check: Rd files
Result: NOTE checkRd: (-1) build_lastdose.Rd:10: Lost braces 10 | code{build_lastdose}: build PK oral with lastdose information | ^ checkRd: (-1) mod-internal.Rd:18: Lost braces 18 | code{colflow_mod}: build a comparison of potentially duplicate flow data | ^ checkRd: (-1) mod-internal.Rd:21: Lost braces 21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time | ^ checkRd: (-1) mod-internal.Rd:23: Lost braces 23 | code{flowData_mod}: correct flow data | ^ checkRd: (-1) mod-internal.Rd:25: Lost braces 25 | code{concData_mod}: correct concentration data | ^ checkRd: (-1) mod-internal.Rd:27: Lost braces 27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate, | ^ checkRd: (-1) mod-internal.Rd:30: Lost braces 30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses | ^ checkRd: (-1) mod-internal.Rd:32: Lost braces 32 | code{writeCheckData} | ^ checkRd: (-1) mod-internal.Rd:34: Lost braces 34 | code{processErx}: prepare e-prescription data | ^ checkRd: (-1) mod-internal.Rd:36: Lost braces 36 | code{processErxAddl}: additional processing, checking for connected observations | ^ checkRd: (-1) mod-internal.Rd:38: Lost braces 38 | code{validateColumns}: check columns are in place | ^ checkRd: (-1) mod-internal.Rd:40: Lost braces 40 | code{read}: generic read function | ^ checkRd: (-1) mod-internal.Rd:42: Lost braces 42 | code{setDoseMar}: set unit/rate/date columns | ^ checkRd: (-1) pk-internal.Rd:19: Lost braces 19 | code{takeClosest}: take value at nearest time | ^ checkRd: (-1) pk-internal.Rd:22: Lost braces 22 | code{takeClosestTime}: find nearest time | ^ checkRd: (-1) pk-internal.Rd:24: Lost braces 24 | code{daysDiff}: number of days between two dates | ^ checkRd: (-1) pk-internal.Rd:26: Lost braces 26 | code{minDiff}: difference (in minutes) of time vector | ^ checkRd: (-1) pk-internal.Rd:28: Lost braces 28 | code{fixDates}: add leading zeroes to date | ^ checkRd: (-1) pk-internal.Rd:30: Lost braces 30 | code{joinFlowMar}: rbind two data sets | ^ checkRd: (-1) pk-internal.Rd:32: Lost braces 32 | code{updateInterval_mod}: replace maxint with difference between surgery time | ^ checkRd: (-1) pk-internal.Rd:35: Lost braces 35 | code{fix_serum_time}: create time variable | ^ checkRd: (-1) pk-internal.Rd:37: Lost braces 37 | code{merge_by_time}: impute in x by closest time in y | ^ checkRd: (-1) pk-internal.Rd:39: Lost braces 39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file | ^ checkRd: (-1) pk-internal.Rd:41: Lost braces 41 | code{addZeroDose}: add rows of zero dose, after a gap | ^ checkRd: (-1) pk-internal.Rd:43: Lost braces 43 | code{pkdata} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.4-11
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'glmnet', 'logistf' Flavor: r-release-linux-x86_64

Version: 0.4-11
Check: examples
Result: ERROR Running examples in ‘EHR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Logistf > ### Title: Firth's penalized-likelihood logistic regression with more > ### decimal places of p-value than 'logistf' function in the R package > ### 'logistf' > ### Aliases: Logistf > > ### ** Examples > > data(dataPheWAS) > fit <- Logistf(X264.3 ~ exposure + age + race + gender, data=dd) Error: Logistf requires the logistf package, please install it. Execution halted Flavor: r-release-linux-x86_64

Version: 0.4-11
Check: HTML version of manual
Result: NOTE Skipping checking math rendering: package 'V8' unavailable Flavor: r-release-linux-x86_64